Question

How to perform ligand and DNA alignment in pymol?

Answer 1

To perform ligand and DNA alignment in PyMOL, follow these steps: Open the application, double-click on the relevant PDB files, select 'Hide Conformations' for the ligand, and click 'Create' to generate the alignment.

Step-by-step explanation:

To perform ligand and DNA alignment in PyMOL, you can follow these steps:

1. Open the PyMOL application.
2. Double-click on the PDB files of the ligand and DNA molecules to open them in separate windows.
3. On the window displaying the ligand structure, select the 'Action on Create' option and choose 'Hide Conformations'.
4. Click on the 'Create' button to generate the alignment.